MmuEX6077428 @ mm9
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35308708-35309291:-
Coord C1 exon
chr17:35309230-35309291
Coord A exon
chr17:35309073-35309139
Coord C2 exon
chr17:35308708-35308749
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCCATCTGCCCCTCAACAGCAA
3' ss Score
7.62
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GAGGAAAAGCTTTTGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGAGGGGATCAACAAG
Seq A exon
CAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGG
Seq C2 exon
TGAAGTACATGGAGTTTGATCTGAATGGAAATGGAGATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(8.9=38.1)
A:
PF134991=EF-hand_7=FE(24.4=100)
C2:
PF0003627=EF-hand_1=PU(50.0=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAAGCTTTTGGACTGCTGA
R:
CGATATCTCCATTTCCATTCAGATCA
Band lengths:
103-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: