MmuEX6077428 @ mm10
Exon Skipping
Gene
ENSMUSG00000024397 | Aif1
Description
allograft inflammatory factor 1 [Source:MGI Symbol;Acc:MGI:1343098]
Coordinates
chr17:35171763-35172346:-
Coord C1 exon
chr17:35172285-35172346
Coord A exon
chr17:35172128-35172194
Coord C2 exon
chr17:35171763-35171804
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCCATCTGCCCCTCAACAGCAA
3' ss Score
7.62
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GAGGAAAAGCTTTTGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGAGGGGATCAACAAG
Seq A exon
CAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGG
Seq C2 exon
TGAAGTACATGGAGTTTGATCTGAATGGAAATGGAGATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024397-'10-13,'10-9,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.207 C2=0.010
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(8.9=38.1)
A:
PF134991=EF-hand_7=FE(24.4=100)
C2:
PF134991=EF-hand_7=FE(15.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAAGCTTTTGGACTGCTGA
R:
CGATATCTCCATTTCCATTCAGATCA
Band lengths:
103-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types