RnoEX0008164 @ rn6
Exon Skipping
Gene
ENSRNOG00000000853 | Aif1
Description
allograft inflammatory factor 1 [Source:RGD Symbol;Acc:61924]
Coordinates
chr20:5162414-5162969:-
Coord C1 exon
chr20:5162908-5162969
Coord A exon
chr20:5162735-5162801
Coord C2 exon
chr20:5162414-5162455
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTGGCCCCCAACAGCAC
3' ss Score
6.94
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
GAGGAAAAGCTTTTGGACTGCTGAAAGCCCAACAGGAAGAGAGGTTGGATGGGATCAACAAG
Seq A exon
CACTTCCTCGATGATCCCAAGTACAGCAGTGATGAGGATCTGCAGTCCAAACTGGAGGCCTTCAAGA
Seq C2 exon
CGAAGTACATGGAGTTTGATCTGAATGGCAATGGAGATATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000853-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(10.9=47.6)
A:
PF134991=EF-hand_7=FE(23.9=100)
C2:
PF134991=EF-hand_7=FE(15.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAAGCTTTTGGACTGCTGA
R:
CGATATCTCCATTGCCATTCAGA
Band lengths:
103-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]