HsaEX6046265 @ hg19
Exon Skipping
Gene
ENSG00000204472 | AIF1
Description
allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:352]
Coordinates
chr6:31583298-31583922:+
Coord C1 exon
chr6:31583298-31583359
Coord A exon
chr6:31583447-31583513
Coord C2 exon
chr6:31583881-31583922
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTTCCCCTCCATAGCAA
3' ss Score
9.36
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGGAAAAGCTTTCGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGATGAGATCAACAAG
Seq A exon
CAATTCCTAGACGATCCCAAATATAGCAGTGATGAGGATCTGCCCTCCAAACTGGAAGGCTTCAAAG
Seq C2 exon
AGAAATACATGGAGTTTGACCTTAATGGAAATGGCGATATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204472-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.326 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(13.7=61.9)
A:
PF134991=EF-hand_7=FE(23.2=100)
C2:
PF134991=EF-hand_7=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAAGCTTTCGGACTGCT
R:
CAATATCGCCATTTCCATTAAGGTCA
Band lengths:
103-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)