HsaEX6046265 @ hg38
Exon Skipping
Gene
ENSG00000204472 | AIF1
Description
allograft inflammatory factor 1 [Source:HGNC Symbol;Acc:HGNC:352]
Coordinates
chr6:31615521-31616119:+
Coord C1 exon
chr6:31615521-31615582
Coord A exon
chr6:31615680-31615736
Coord C2 exon
chr6:31616019-31616119
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCCTCCATAGCAATTCCTAGACG
3' ss Score
-1.6
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAGGAAAAGCTTTCGGACTGCTGAAGGCCCAGCAGGAAGAGAGGCTGGATGAGATCAACAAG
Seq A exon
ACGATCCCAAATATAGCAGTGATGAGGATCTGCCCTCCAAACTGGAAGGCTTCAAAG
Seq C2 exon
CAGTTGGTTGGCAACCCCTTCCTCAGTCCCCTGCTGAAAACCCTCCAGTCAGCGCTTATCCCTTCTGCTCTCTCCCCTCACCCAGAGAAATACATGGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204472-'2-4,'2-2,3-4
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.326 C2=NA
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(13.7=61.9)
A:
PF134991=EF-hand_7=FE(23.2=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTCGGACTGCTGAAGG
R:
TTCTCTGGGTGAGGGGAGAGA
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains