BtaEX0002939 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020554 | AIF1
Description
Bos taurus allograft inflammatory factor 1 (AIF1), mRNA. [Source:RefSeq mRNA;Acc:NM_173985]
Coordinates
chr23:27504210-27505159:-
Coord C1 exon
chr23:27505098-27505159
Coord A exon
chr23:27504924-27504990
Coord C2 exon
chr23:27504210-27504251
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTTTCCCCCTACAGCAA
3' ss Score
10.5
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
GAGGAAAAGCCTTTGGGCTGCGGAAAGCCCAGCAGGAAGAGAGAATCAATGAAATCAACCAG
Seq A exon
CAATTCCTGGATGATCCCAAATACAGCAGTGATGAGGACCTGCCCTCCAAACTGGAAGCCTTCAAGA
Seq C2 exon
AGAAATACATGGAGTTTGACCTGAATGAAGATGGAGGTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020554_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.304 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134991=EF-hand_7=PU(15.7=47.8)
C2:
PF134991=EF-hand_7=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGGGCTGCGGAAAG
R:
CGATACCTCCATCTTCATTCAGGT
Band lengths:
95-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development