MmuEX6078762 @ mm9
Exon Skipping
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57401063-57402846:+
Coord C1 exon
chr17:57401063-57401211
Coord A exon
chr17:57401780-57401895
Coord C2 exon
chr17:57402423-57402846
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCATTTCTCAAGCAGCTC
3' ss Score
6.05
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACGCTAGGCCCCCTGATCCCCCAACTACTGCCCCACCTGATAGCAGCAGTAGCAGCACCAACAGTGGATCCCAGGACAATAAGGAGAG
Seq A exon
CTCAGAAGAGCCCCCTTCAGAAGGCCAGGACACCCCCATCTATACTGAGTTCGATGAGGACTTTGAGGAGCCTGCATCCCCTATCGGCCAGTGTGTGGCTATCTACCATTTTGAAG
Seq C2 exon
GATCCAGCGAGGGAACCGTCTCCATGTCCGAGGGGGAAGACCTCAGCCTGATGGAGGAAGACAAGGGTGATGGATGGACGCGGGTCAGGAGGAAACAGGGAGCTGAGGGCTACGTGCCCACCTCTTACCTCCGAGTCACACTCAACTGAACCCCACCAGAGGGGGACGAGGGGCAGGGCTGTCAGCTGCTGCTTCTGGGCCACAGGGGGGGCCCCCAGGACCTTGCACTTTATTCCTGCCCACGTGGCTTTTGGCTGAGACCTGTGTAACCTGCTGTCCCTCACTCACCTGTCACCTGTCACCCTACGGGGACCCACTTGTGGCTTCCCACGTGGTTGTACATATTTGTCATTTAAGATCTTTCTTCCCGCCGCTTGGCTTGAGCCAAGTTTTGTTTTATATTAAAAAAGTATATATAATTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-'14-21,'14-20,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.875 C2=0.878
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
A:
PF0001823=SH3_1=PU(14.6=17.5)
C2:
PF0001823=SH3_1=PD(83.3=80.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGAGGGGACAGCCTAAG
R:
GAGGTAAGAGGTGGGCACGTA
Band lengths:
245-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: