MmuEX6078762 @ mm10
Exon Skipping
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57261640-57263697:+
Coord C1 exon
chr17:57261640-57261788
Coord A exon
chr17:57262354-57262472
Coord C2 exon
chr17:57263000-57263697
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCCATTTCTCAAGCAG
3' ss Score
5.53
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACGCTAGGCCCCCTGATCCCCCAACTACTGCCCCACCTGATAGCAGCAGTAGCAGCACCAACAGTGGATCCCAGGACAATAAGGAGAG
Seq A exon
CAGCTCAGAAGAGCCCCCTTCAGAAGGCCAGGACACCCCCATCTATACTGAGTTCGATGAGGACTTTGAGGAGCCTGCATCCCCTATCGGCCAGTGTGTGGCTATCTACCATTTTGAAG
Seq C2 exon
GATCCAGCGAGGGAACCGTCTCCATGTCCGAGGGGGAAGACCTCAGCCTGATGGAGGAAGACAAGGGTGATGGATGGACGCGGGTCAGGAGGAAACAGGGAGCTGAGGGCTACGTGCCCACCTCTTACCTCCGAGTCACACTCAACTGAACCCCACCAGAGGGGGACGAGGGGCAGGGCTGTCAGCTGCTGCTTCTGGGCCACAGGGGGGGCCCCCAGGACCTTGCACTTTATTCCTGCCCACGTGGCTTTTGGCTGAGACCTGTGTAACCTGCTGTCCCTCACTCACCTGTCACCTGTCACCCTACGGGGACCCACTTGTGGCTTCCCACGTGGTTGTACATATTTGTCATTTAAGATCTTTCTTCCCGCCGCTTGGCTTGAGCCAAGTTTTGTTTTATATTAAAAAAGTATATATAATTATATAAAGTTCTTGGAGTCTGCACCGCCAGTGTCGGGAATGGACCTTCAAAAGGCATCTCTGTGGAGAGGTGGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-'26-31,'26-28,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=0.878 C2=0.878
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
A:
PF0001823=SH3_1=PU(14.6=17.1)
C2:
PF0001823=SH3_1=PD(83.3=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGAGGGGACAGCCTAAG
R:
GAGGTAAGAGGTGGGCACGTA
Band lengths:
245-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types