BtaEX6038640 @ bosTau6
Exon Skipping
Description
Bos taurus thyroid hormone receptor interactor 10 (TRIP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001081530]
Coordinates
chr7:18964004-18964880:+
Coord C1 exon
chr7:18964004-18964149
Coord A exon
chr7:18964239-18964360
Coord C2 exon
chr7:18964490-18964880
Length
122 bp
Sequences
Splice sites
3' ss Seq
GCTTTGCCTTTTCCAACCAGCTC
3' ss Score
7.16
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCTTGGCTGGCAGAAGCTGAGAGCCGGGTCCTAAGCAACCGGGGAGACACCCTGGGCCGGCACACCCGGCCTCCAGACCCCCCAGCCAGCGCGCCGCCAGACAGCAGCAGCAACAGCAACAGTGGATCGCAAGAGAACAAGGAGAG
Seq A exon
CTCTGAAGAGCCCCCCTCTGAGGAGGGTCAGGACGCCCCCATCTACACGGAGTTTGATGAGGAATTTGAGGAGGAGCCTGCCTCCCCCATTGGTCACTGTGTGGCCATCTACCACTTTGAAG
Seq C2 exon
GATCCAGCGAGGGCACCATCTCCATGGCTGAGGGCGAGGACCTCAGTCTCATGGAAGAAGACAAAGGCGACGGGTGGACCCGGGTCAGGCGGAAACAGGGGGGTGAGGGCTACGTGCCCACCTCTTACCTCCGCGTCATGCTCAACTGAACCCTGCTGGAAGCGGGAATAGGGGGGCTGTTGGCTGCTGCTTCTGGGCCACGGGGGGCCCCAGGACCTACGCACTTTATTTCTGCCCCCGTGGCTTTGGCTGAGACCTGTGTAACCTGCTGCCCCCCACCCCCTAACTCCTCTCCCCAGATGGACCCGCTGTGCCTTCTACCATTGATGTACATACTCATGTTTCAAATCTTTTTTCTTCCTGCCGCTCGGCTAGGGTCATTTTGTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013834-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.905 C2=0.837
Domain overlap (PFAM):
C1:
PF136541=AAA_32=FE(31.6=100),PF045028=DUF572=FE(28.9=100),PF143891=Lzipper-MIP1=PD(11.8=20.4),PF0218511=HR1=PD(8.0=12.2)
A:
PF136541=AAA_32=PD(3.3=11.9),PF045028=DUF572=PD(21.7=85.7),PF0001823=SH3_1=PU(14.6=16.7)
C2:
PF0001823=SH3_1=PD(83.3=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAGCAACCGGGGAGAC
R:
GAGGTAAGAGGTGGGCACGTA
Band lengths:
249-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]