DreEX0081358 @ danRer10
Exon Skipping
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54179534-54185780:-
Coord C1 exon
chr3:54185692-54185780
Coord A exon
chr3:54183963-54184114
Coord C2 exon
chr3:54179534-54180797
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACGGTTTACTCTTTACACAGTAA
3' ss Score
4.71
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TCGTGGCTGGCAGAAGCAGGAGGACGAGGAGACTCAATACGATACTCCACTCACTCGATCAACAACAATGGAGCTCACAACCCCAACAG
Seq A exon
TAATGATGGTTCCTGTACACTCTTCAGTCCTGGAGCTCTGTCAGATGAAACGGACCCATCGCAGGCCATCTACACCGAGTTTGATGACGAATTTGAGGAAGAAGAGCTCGCCACACCTATCGGTCAATGCACAGCTCTCTACAACTTCCCAG
Seq C2 exon
GCTCCAGCGAGGGAACCATATCCATGCAGGAAGGAGAGGTGCTGGCCGTCGTGGAGGAGGACAAAGGCGACGGATGGACACGGGTGCGCAGAAACAACGGGGATGAAGGCTACATCCCAACCTCGTACGCCACAATCACACTTAACAAATGACCCAGTGCACTATATACCAAACACTAGGAGTAGCTCCAGATCATCAGTCATTATGTCCAAACATGGCCTCTTGGAGAAGATTTAAGGGGGGGACAATCACTGCACAAAACTGCCAATACACTCCTCTCTATGGATGAATGAGCATCTCAGGGCGTCTATTGTGAGAGTAAATGAGACGGTTGGAATAATTGTTCTGCTTATTAATACAACGCAGCAGGGGCGCCATGTACTCCACAGACACATCAGTTGCTGTGGTGGCTTTGCGTGAACAGCTTCGATATTTCAGGATGTTTTGTCTGATGTGTTTGCCACTAAGATCTTCCATCTGCACCTCGATGATGTGATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679-'19-24,'19-22,20-24
Average complexity
S
Mappability confidence:
80%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.788 C2=0.760
Domain overlap (PFAM):
C1:
PF127952=MscS_porin=PD(23.7=73.3)
A:
PF0001823=SH3_1=PU(14.6=13.5)
C2:
PF0001823=SH3_1=PD(83.3=78.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGCTCACAACCCCAAC
R:
CTCCAAGAGGCCATGTTTGGA
Band lengths:
251-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]