RnoEX6038505 @ rn6
Exon Skipping
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9689475-9690752:-
Coord C1 exon
chr9:9690604-9690752
Coord A exon
chr9:9690140-9690258
Coord C2 exon
chr9:9689475-9689623
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTGTCTTCACACAGCTC
3' ss Score
10.18
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACACTAGGCCTCCTGATCCCCCAACTACTGCCCCACCTGATAGTAGCAGTAGCAGCAACAACAGTGGATCCCAGGATAATAAGGAGAG
Seq A exon
CTCAGAAGAGCCCCCTTCAGAAGAAGGCCAGGACACCCCCATCTACACTGAGTTCGATGAGGACTTTGAAGAACCTGCATCCCCCATCGGCCAGTGTGTGGCTATCTACCATTTTGAAG
Seq C2 exon
GATCCAGTGAGGGGACCGTCTCCATGTCCGAGGGGGAAGACCTCAGTCTGATGGAGGAAGACAAGGGTGATGGATGGACACGGGTGAGGAGGAAACAGGGAGGCGAGGGCTATGTGCCCACCTCTTACCTCCGAGTCACACTCAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524-'23-24,'23-22,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.951 C2=0.918
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
A:
PF0001823=SH3_1=PU(14.6=17.1)
C2:
PF0001823=SH3_1=PD(83.3=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGAGGGGACAGCCTAAG
R:
GACTCGGAGGTAAGAGGTGGG
Band lengths:
251-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]