MmuEX6086222 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65789839-65803456:-
Coord C1 exon
chr11:65803217-65803456
Coord A exon
chr11:65794688-65794849
Coord C2 exon
chr11:65789839-65790035
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTATCTGTTCTCCTGTCAAGGGC
3' ss Score
7.8
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CGCCACTTCAGCGTGTTTGCCCTCTGCTTCCCAGGAGCTGATGCCCTCTCTTCCATCTATAGCACCATCTTGACCCATCATCTGAAGTTTGGAAACTTTCCCACCACCCTGCAGAAATCCATCCCTCCTCTGATAAACCTGGCTGTCACCTTCCATCAGAAAATTGCCACCACGTTTCTGCCCACAGCAATCAAATTTCACTACATCTTCAATCTCAGAGATTTTGCCAATATTTTCCAA
Seq A exon
GGCATTCTTTTCTCCTCCGTGGAATGTGTAAAGTCCACACAGGACCTAGTGAAACTCTATCTGCACGAGTCAAGTCGGGTTTATCGGGATAAGATGGTGGAAGAAAAGGATTTCAATCTTTTTGACAAAATCCAAACAGAATTCCTCAAGAAAAATTTTGAT
Seq C2 exon
GATAGTGAAGAGGTGCTGAAGCAGACCCAGAACCTGAACATGTATTGTCACTTTGCAAATGGCATTGGTGAGCCCAAGTACATGCCTGTGCAATCATGGGACCTTCTGAATCAGACTCTGGTGGAAGCCCTGGAGAGCCACAATGAAGTGAATGCTGTGATGGACCTAGTTCTCTTTGAGGATGCCATACGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.0=100)
A:
PF127752=AAA_7=PD(8.1=44.0)
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATGCCCTCTCTTCCAT
R:
TCAGGTTCTGGGTCTGCTTCA
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: