MmuEX6086222 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65976337-65989954:-
Coord C1 exon
chr11:65989715-65989954
Coord A exon
chr11:65981186-65981347
Coord C2 exon
chr11:65976337-65976533
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTATCTGTTCTCCTGTCAAGGGC
3' ss Score
7.8
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CGCCACTTCAGCGTGTTTGCCCTCTGCTTCCCAGGAGCTGATGCCCTCTCTTCCATCTATAGCACCATCTTGACCCATCATCTGAAGTTTGGAAACTTTCCCACCACCCTGCAGAAATCCATCCCTCCTCTGATAAACCTGGCTGTCACCTTCCATCAGAAAATTGCCACCACGTTTCTGCCCACAGCAATCAAATTTCACTACATCTTCAATCTCAGAGATTTTGCCAATATTTTCCAA
Seq A exon
GGCATTCTTTTCTCCTCCGTGGAATGTGTAAAGTCCACACAGGACCTAGTGAAACTCTATCTGCACGAGTCAAGTCGGGTTTATCGGGATAAGATGGTGGAAGAAAAGGATTTCAATCTTTTTGACAAAATCCAAACAGAATTCCTCAAGAAAAATTTTGAT
Seq C2 exon
GATAGTGAAGAGGTGCTGAAGCAGACCCAGAACCTGAACATGTATTGTCACTTTGCAAATGGCATTGGTGAGCCCAAGTACATGCCTGTGCAATCATGGGACCTTCTGAATCAGACTCTGGTGGAAGCCCTGGAGAGCCACAATGAAGTGAATGCTGTGATGGACCTAGTTCTCTTTGAGGATGCCATACGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'46-55,'46-54,47-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.0=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGATGCCCTCTCTTCCAT
R:
TCAGGTTCTGGGTCTGCTTCA
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types