BtaEX6087255 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31120670-31128686:+
Coord C1 exon
chr19:31120670-31120912
Coord A exon
chr19:31127472-31127633
Coord C2 exon
chr19:31128490-31128686
Length
162 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTATTCTCCTTACAGGGT
3' ss Score
10
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CAGCGTCACTTCAGTGTGCTCACCCTCTCCTTCCCGGGAGCAGACGCCCTGTCCTCCATCTACAGCGCCATCCTGACTCAGCACCTCAAGCTGGGGAGCTTCCCGGCAGCGCTGCACAAGAGTGTCCCCCAGCTGCTCCATCTGGCCCTCACCTTCCACCAGAAAATCGCCACCACGTTCCTTCCCACAGCGATCAAATTCCACTACATCTTCAACCTCAGGGACTTCGCCAACATTTTCCAG
Seq A exon
GGTATTCTCTTCTCCTCCGTGGAATGTGTCAGGTCCTCACAGGACCTAGTAAATCTCTATCTGCACGAATCGAATCGGGTTTATCGGGATAAGATGGTGGAAGAGAAGGACCTTGATCTTTTTGATAAGATCCAGGTAGACGTGGTCAAGAAAATTTTTGAT
Seq C2 exon
GACCTTGGAGAGACTGTGGAGCAGACCCAAAGCCTGAACGTGTATTGCCATTTTGCACACGGTATCGGGGAGCCCAAGTACATGCCTGTCCAGTCGTGGGAACTTCTGACCCAGACGCTGGTGGAGGCCCTGGAGAGCCACAACGAAGTCAACACGGTGATGGACCTGGTGCTCTTCGAGGACGCCGTGCGCCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'59-69,'59-68,60-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.2=100)
A:
PF127752=AAA_7=PD(8.0=40.7)
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCCACCAGAAAATCGCC
R:
GACTTCGTTGTGGCTCTCCAG
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]