GgaEX6015772 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1076120-1087112:+
Coord C1 exon
chr18:1076120-1076359
Coord A exon
chr18:1084935-1085096
Coord C2 exon
chr18:1086916-1087112
Length
162 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTTGCTCCCCACAGGGC
3' ss Score
11.87
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CGTCACTTCTGCGTCTTCGCCCTTTCCAGCCCTGGGCAGGACGCCTTGTCCAGGATCTACAGCACCATCTTAATGCAGCACCTGGCAAACAGGAATTTCTCAGGAGCTGTGCAGAAGTCAGCTCAGCAGCTGATCTCCCTGGCCCTGGGCCTGCACCAGAGGGTAGCTGCTGCTTTCCTGCCGACGGCTATCAAGTTCCACTACATTTTCAACCTGAGAGACTTCTCCAATATCTTCCAA
Seq A exon
GGCCTTCTGTTTTCTACCCCTGAATGTCTGAAGCAACCGCAAGACCTGGTGAAGCTCTACCTGCATGAGTCAAACCGGGTGTACCGGGATAAGATGGTTGAAGAAAAGGATTATGGCACCTTTGATAAAATCCAGCTGGAGATGGTGAAGAAGTTCTATGAC
Seq C2 exon
GACATTGAGGAGACCTTAGAGCAGACCAAGCAAATGAATGTTTATTGCCATTTTGCTAAAGGCATTGGCGAACCTAGTTATAGGCCTGTTCCAACCTGGGAGGAGTTGAACCAGATCCTCGTGGAAGCCTTGGAAAACTACAATGAAGTCAATCCTGCCATGAACCTGGTGCTATTTGAGGATGCCATGTGCCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.0=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(7.1=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTGTGCAGAAGTCAG
R:
AACTCCTCCCAGGTTGGAACA
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]