RnoEX0028647 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52496190-52515322:-
Coord C1 exon
chr10:52515083-52515322
Coord A exon
chr10:52502039-52502200
Coord C2 exon
chr10:52496190-52496386
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTGTTCTCCTGGAAGGGC
3' ss Score
6.37
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CGCCACTTCAGTGTGTTTGCCCTCTGCTTCCCAGGAGCTGATGCTCTCTCTTCCATCTATAGCACCATCCTGACCCATCACCTGAAGCTTGGAAACTTCCCCACCACCCTGCAAAAATCCATCCCTTCTCTAATCAACCTGGCTGTCACCTTCCACCAGAAAATTGCCACCACATTTCTGCCCACAGCAATCAAATTTCACTACATCTTCAACCTCAGAGATTTTGCCAATATTTTCCAA
Seq A exon
GGCATTCTTTTCTCCTCCACTGAATGTGTGAAGTCCACACAGGACCTCGTAAAACTCTATCTGCATGAGTCAGACCGGGTTTATCGGGATAAGATGGTGGAGGAAAAGGATTTCAATCTTTTTGACAAACTCCAAACAGAATTCCTCAAGAAAAATTTTGAC
Seq C2 exon
GATAGCAAAGGGATGCTGGAGCAGACCCAAAACCTGAACATGTATTGTCACTTTGCAAATGGCATTGGTGAGCCCAAGTACATGCCTGTGCAATCATGGGACCTTCTGAGCCAGACTCTGGTGGAAGCCCTGGAGAGCCACAACGAAGTGAATGCTGTGATGGACCTGGTTCTCTTTGAGGATGCCATACATCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'57-57,'57-56,59-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(29.0=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(15.8=28.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCATCACCTGAAGCTTGG
R:
CAGGCATGTACTTGGGCTCAC
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]