MmuEX6087797 @ mm10
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77977537-77979048:+
Coord C1 exon
chr11:77977537-77977654
Coord A exon
chr11:77977742-77977844
Coord C2 exon
chr11:77978013-77979048
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTGTCCCCTGACAGATT
3' ss Score
10.31
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTTTCCAG
Seq A exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTCTGCTGTCCCTCACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGACACATTACCAGCAGCCATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'34-30,'34-28,35-30=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000093995fB16522
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTGGGAGGAGTGTAC
R:
AGCGGTGCCAAGAAAATAGGT
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types