MmuEX6087797 @ mm9
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77791039-77792550:+
Coord C1 exon
chr11:77791039-77791156
Coord A exon
chr11:77791244-77791346
Coord C2 exon
chr11:77791515-77792550
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTTGTCCCCTGACAGATT
3' ss Score
10.31
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCCGCCTCCAGTGCCCTGGACGCTGCTCACCTGGCTGCTGCCATCTTCCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTTTCCAG
Seq A exon
ATTCCAGGGGAAAAGTCCCCTGCAACTTCCCCGAACTCATCCTCGCCCCTATAACCGCATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACTGGA
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACACGCAGTCCTGCATCGCAGGCCAGCGGCAGGGCTCCCGGCTCTCTGCTGTCCCTCACCTCCTGTACATACTGCCTGGGAAGAGACACCACCAACCCCTTCCCCGCCTGCAATGCCCACAGTGACCTATTTTCTTGGCACCGCTGTGCCCACTTCGGGCCCTTCTTTGGATTCAGGGGCATCTGCCTCGGGTAGAACGTAGCTGGGACACATTACCAGCAGCCATCATTCTCCTGCTTCTCTTTTGCCCTGGACCTCCAGCCTGGAAGTTGCAGGCTGACTGAGGAGGGGCACTTGTTACACATGGCCACCATCCTGCCTGGCATGTGAGGACTCCAGGAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCTACCAGAGGCCAAAATTGTTCTCAACTGTGACCTCTTGGTAGTCCTGGCGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'21-22,'21-21,22-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTGGGAGGAGTGTAC
R:
AGCGGTGCCAAGAAAATAGGT
Band lengths:
247-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: