GgaEX1052036 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5911368-5912215:-
Coord C1 exon
chr19:5912095-5912215
Coord A exon
chr19:5911922-5912024
Coord C2 exon
chr19:5911368-5911397
Length
103 bp
Sequences
Splice sites
3' ss Seq
GACTCCATCTCCTCCCACAGGCT
3' ss Score
9.28
5' ss Seq
GGAGTAAGC
5' ss Score
5.07
Exon sequences
Seq C1 exon
CCGTGGCCAAAGCTGTGCCCTCGGAGACGGCACTGGAGGGCACCAATGTGGCCATCGCCATCTTCCTGCCTGTGCTGGTGCTGGCTCTGCTCATCGGAGGCGTTTACCTCTACTTCTCCAA
Seq A exon
GCTGCAGGGGAAGCCAGCCCTACAGCTGCCCCTTTCCGGATCCCACCCCTATGATCACATCACCGTGGAGTCAGCATTTGACAACCCCACCTATGAGACAGGA
Seq C2 exon
GAAACGAGGGAATATGAGGTGTCCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'19-21,'19-18,20-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGCCAAAGCTGTGC
R:
TGGACACCTCATATTCCCTCGT
Band lengths:
146-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]