DreEX6089288 @ danRer10
Exon Skipping
Gene
ENSDARG00000100876 | sez6a
Description
seizure related 6 homolog a [Source:ZFIN;Acc:ZDB-GENE-030131-8208]
Coordinates
chr10:36884311-36890714:-
Coord C1 exon
chr10:36890606-36890714
Coord A exon
chr10:36890425-36890524
Coord C2 exon
chr10:36884311-36884746
Length
100 bp
Sequences
Splice sites
3' ss Seq
TGGTTTGTGCCTCTCTACAGAGC
3' ss Score
9.8
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GTGCTGATTCAGAGTTTGACGTGGAAGGCGTGAACATCGCCATCGCGGTTCTGATTCCTGTGGCAGTGGTGCTGATGCTGCTCTTGGTGGTTTTTCTCTGCATCTCAAT
Seq A exon
AGCTCAAAGTAAGAGTCTTCAGCTCCCCGGGACATCTTCTCCACCATACGACAACATGACTGAAGAATCTGCTTTTGATAACCCTGTGTATGAGACGGGA
Seq C2 exon
GATGCAAGGCAATACGAGGTGTGTATGTAGAATCCATCTGTATTTCTTTTGCCACCTCTCCTGTTTATCAGCCGGGCTCCTGTAAATGTTTTTTTCTCTCTACGACCTCTGCCAGCACGTTAAAGATGGTGGACAATGGGCTAGTATTTCTGTAGCACATAAAAGCCTGAGGTTTGTGGTTTCTTTCTCCTTTTTTTGTTGATAAAAAACCCCAAGTCTTACACATTGAGTCTGGACTACATCAGAATGCACTGGATTCATTGTTTCACATTGGGGAACAAGAGAGGTGAAAGCTGTGTTCTCCCAAATGCATCCAAACATAGGAGATTTTCAGTCTTGAGTTGCACTGGTGATGGCGATTAACCATGTATAACACTCTTGCTGTATAGAAGCCTATTTGCAGAACACTTTGTAAATAAACTGTCTAAAACTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100876-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.441 C2=0.000
Domain overlap (PFAM):
C1:
PF151021=TMEM154=FE(32.4=100)
A:
PF151021=TMEM154=FE(29.7=100)
C2:
PF151021=TMEM154=PD(7.2=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATTCCTGTGGCAGTGGTG
R:
AGAAACCACAAACCTCAGGCT
Band lengths:
243-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]