BtaEX6085574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20879077-20880624:-
Coord C1 exon
chr19:20880507-20880624
Coord A exon
chr19:20880320-20880422
Coord C2 exon
chr19:20879077-20880155
Length
103 bp
Sequences
Splice sites
3' ss Seq
TAGGCTTCTCTGCTGCACAGGCT
3' ss Score
4.08
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
TTGCCAAGGTGCCAGCTGCCTCCAGCACACTGGATGCTGCTCACCTCGCAGCTGCCATCTTCTTGCCGCTGGTAGCGATGGCGCTCTTGGTGGGAGGCGTGTACCTCTACTTCTGCAG
Seq A exon
GCTCCAGGGGAACAGCCCCCTGCAGCTGCCCCGGACACGACCCCGCCCTTATGACCGCATCACCGTGGAGTCAGCGTTTGATAATCCAACTTACGAGACTGGA
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTCTCCATCTAGGTGGGGCGGCCTGGGGAAGCCGGCTCCGCCCTGCATCCCAGTCCAGCAGCAGAGCTCCCAGCTTCCTGCTCCCTTGCCCTCCACCTCCTGTACATACCACCTGGGAAGAGATGCGGCCAGTCCCTCAAGAAGTTCTGCACTTCCCGCCTGCAATACCCACCAGGGCCTATTATCTTGGGACCACTGCCCACTTAGGGCCCTTCCTTGGGTCCAAGTCAGGGGCATCTGCCTCCAGGCCAAACACAGCTGGAGCACATGCACCAAGAACCAGCATTCTCCTGACCCTCTCTCAGGCCTGGGACCTCTGGGCTGGAATTCACAGGCAGGGTGGAGTACCTCCCTCCATGTGACCACCCTCCAGCCCTGGCATGCAGCAGCCCTGACATGACAGTGGCGGAAACTGTGCCAGGGGGCTCCTCACAGGGCCGCTGCCAGTGGCCAACCCTGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'18-24,'18-23,19-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTCTTGCCGCTGGTAG
R:
GAACTTCTTGAGGGACTGGCC
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]