RnoEX6048638 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64865805-64867286:-
Coord C1 exon
chr10:64867169-64867286
Coord A exon
chr10:64866980-64867082
Coord C2 exon
chr10:64865805-64866823
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTCTGTCCCCCACAGACT
3' ss Score
9.79
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
TTGCCAAGGCACCTGCCACCTCCAGTGCCCTGGATGCTGCCCACATGGCAGCTGCCATCTTTCTACCATTGGTGGCCATGGTGTTGCTGGTGGGAGGAGTGTACCTCTATTTCTCCAG
Seq A exon
ACTCCAGGGAAAAAGTCCTCTGCAGCTTCCCGGAACTCATCCTCGCCCCTATAACCGTATCACGGTAGAGTCAGCATTTGACAATCCAACTTATGAGACCGGA
Seq C2 exon
TCTCTTTCCTTTGCAGGAGACGAGAGAATATGAAGTTTCCATCTAGGTGGGAGCAGCCTGGGGATGCACATGCAGTCCTGCATCACAAGCCGGCGGCAGGGCTCCCAGCTCTCTGCTGTCCCTCACCTCCTGTACATACCGCCTGGGAAGAGACACCACCGACCCCTTCCCCGCCTGCAATGCCCACAGTGACCTCTTTTCTTGGCACCACTGCCCACTTAGGGCCCTTCTTTGGATTTGGCGGTGCGTGCCTCAGGTAGAACTGGCGCACATTACCAGAAGCCAACATTCTGCTTCTCTTTTGCCCTGGACCTCCAGCCCTGGAAGTTGCAGGCAGAGAAGGGGCACGTCTTACACATAGCCACCATCCAGCCCTGGCATGCAAGGACTCCAGAAGAGCTGACTTGACAGCAGGGTGCCCCTCACAGGGCCAGCACCAGAGGTAGAGGTCGAAATTGTTCTCAACTATGACCTCTTGGAAGTCCTGGCATACCAACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'27-24,'27-22,29-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000048543fB13236
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTGGTGGCCATGGTGTT
R:
AAGAGGTCACTGTGGGCATTG
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]