MmuEX6088390 @ mm10
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84908220-84911226:+
Coord C1 exon
chr11:84908220-84908305
Coord A exon
chr11:84909480-84909553
Coord C2 exon
chr11:84910393-84911226
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTCGGCTTCCCTCAGACA
3' ss Score
7.74
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTTTAGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACGGTCATCAAGCACGCATGGCATAAGTGGAGA
Seq A exon
ACAGACCCAGCAACAAAGTCCAGACACCACAACAGGATCAGGCTGGTATTACATCTATCAGAGCACTGCCCCAG
Seq C2 exon
GGCTCGATAAAGTTTCACTGCAGGAAGTCTCCACTTCAGTATGCTGACATCTGCCCTGACCCTTCAGCCTCCTGTGTTACTGGCTTTAATCAGATTCTGCTAGAAAGCCACAGGCCAGTCCAAGTGTGACTCTTCTACCCCCACCTGCCTGAGTGATCTTTAGTGCCTTTGTTTCCACAAGGCCTTTTCCTGCCAGCTGTCTTGCCAAAGACATTAGATCCCACACGCAAGTGCCAAGCTATTCCCACGGCGACTCCAACTGCACGTGCAAGCAAATTCCAGCCTGAGCCAGGGCTTCATGGCCAGAGTGCCAGCCTTCCAGGGCTGTGGCTTCAGCACTGGCAGGATCTGGGGGTGCTGGGTACCAAGCCAGGATTAGGGCCACAACATCCCAGCTTAGTATCTTTGTGCTCAAGCTCCATCCAGAATGTTGTCACTACAGCAAGATGGATACTGGGCCATCCACAAGCACTTTAAAAGGGCCAAGTCACCCTAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'45-47,'45-46,46-47
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.330 C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCACGCATGGCATAAGT
R:
GGTGGGGGTAGAAGAGTCACA
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types