MmuEX6088390 @ mm9
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84721722-84724728:+
Coord C1 exon
chr11:84721722-84721807
Coord A exon
chr11:84722756-84723055
Coord C2 exon
chr11:84723895-84724728
Length
300 bp
Sequences
Splice sites
3' ss Seq
AAGGACTGTTTCTCTTTAAGATC
3' ss Score
6.99
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTTTAGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACGGTCATCAAGCACGCATGGCATAAGTGGAGA
Seq A exon
ATCAGAATGGCCTGTCTTGCCTCTAAAGAACTGGATGGTATGGAGGAGAAACCCATGCCTCAGGCTCCTGGTACCCTGCGGTCCTCGATGTCCCCAGCACACACTAGGTTCCTGGGAGCAATAATCCATCTCTGGCCCCTGGGACTGGTGCTAGCCAACTCAGCTGATGGCGTACGTGGCTTTCAGAGGAAACTGGTAGCCCATGCCTGCCTTCGGCTTCCCTCAGACAGACCCAGCAACAAAGTCCAGACACCACAACAGGATCAGGCTGGTATTACATCTATCAGAGCACTGCCCCAG
Seq C2 exon
GGCTCGATAAAGTTTCACTGCAGGAAGTCTCCACTTCAGTATGCTGACATCTGCCCTGACCCTTCAGCCTCCTGTGTTACTGGCTTTAATCAGATTCTGCTAGAAAGCCACAGGCCAGTCCAAGTGTGACTCTTCTACCCCCACCTGCCTGAGTGATCTTTAGTGCCTTTGTTTCCACAAGGCCTTTTCCTGCCAGCTGTCTTGCCAAAGACATTAGATCCCACACGCAAGTGCCAAGCTATTCCCACGGCGACTCCAACTGCACGTGCAAGCAAATTCCAGCCTGAGCCAGGGCTTCATGGCCAGAGTGCCAGCCTTCCAGGGCTGTGGCTTCAGCACTGGCAGGATCTGGGGGTGCTGGGTACCAAGCCAGGATTAGGGCCACAACATCCCAGCTTAGTATCTTTGTGCTCAAGCTCCATCCAGAATGTTGTCACTACAGCAAGATGGATACTGGGCCATCCACAAGCACTTTAAAAGGGCCAAGTCACCCTAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'33-36,'33-34,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.330 C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACACATAGCTGCCACGGT
R:
CCTGGCTCAGGCTGGAATTTG
Band lengths:
342-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: