BtaEX6084930 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13157430-13160959:-
Coord C1 exon
chr19:13160874-13160959
Coord A exon
chr19:13159266-13159568
Coord C2 exon
chr19:13157430-13158167
Length
303 bp
Sequences
Splice sites
3' ss Seq
ATATGCTGTTCTTTTTTAAGATC
3' ss Score
9.6
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
CCGTCCGTTCCTGGCTGACTCGGAAGCATATCCAGCAGCTGCACGCGGCTGCCACGGTCATCAAGCGTGCGTGGCGAGAGTGGAGG
Seq A exon
ATCAGAATGGCCTTCCTTGCTTCTGAAGAACTGGATGGTGTGGAGGAAAAACACTCACCTCACGCTCCCTGCTCCCCGGGCTCCAGTCCGCTGCCCCCGGCTCAGACCAGGCTCCAGGGCGCAATAACCCGCCTCTGGCCCCTGGGACTGGCCCTGGCCAACGCAGCTGTGGGTGTTCACGGCTTTCAGAGGAAGCTGGTGGTCTTCGCCTGCCTCCAGCTCCCCGTGGGCAGCCCCAGGAGCTGCGCCGTCCAGACAGCCCAAGAACAAGCCGGAGTCCTGTCCATCCGAGCGCTGCCTCAG
Seq C2 exon
GGCTCGATCAGGTTTCACTGCAGAAAGTCTCCGCTGCGCTACGCTGACACCTGCCCTGGACCCTCGCCCGACAGTGTTACTGGCTTTAATCAGATCCTGCTGGAAAGACACAGGCCGGGCCACGTGTGACCTCTTCTCCCCTCCCAGCCTCACCAGCTGGGCCATCCCCTGTGCCTTTTTTCCCACAAGGCCTTTTCCTGCCAGCAGCCTCGCCAGAGACATGTAATCAACACCCGGCTGCCAGACAACTCCCACAGGGACTCCGAGTGCACTCAGGGAGCCATGGCTCCAGCCTGCAGGCGGGCCAGCGGCTGCACCAGTGGCCTGGGGCAGCAGTCTACACATCCCCTGCCCCCACACCCTGATGGGTATCAGGGTTGGCAGTGACCAAACCAGGATTAGGAAACGTCAGGGCCTTCACTACCTTCACAGATCTAACTCAGCGGTGCTGGCCATCACTACAGTGGACACCCCACAGGCAAAGTCAGCTTGATATCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'39-48,'39-45,40-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.198 C2=0.095
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATATCCAGCAGCTGCA
R:
ATGGCTCCCTGAGTGCACTC
Band lengths:
348-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]