GgaEX0007447 @ galGal4
Exon Skipping
Gene
ENSGALG00000005374 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:8126102-8127940:-
Coord C1 exon
chr19:8127855-8127940
Coord A exon
chr19:8127212-8127505
Coord C2 exon
chr19:8126102-8126886
Length
294 bp
Sequences
Splice sites
3' ss Seq
TTTCTGCATCTCTTTATCAGGCA
3' ss Score
8.46
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTATTCGCTCCTGGTTAGCCAAGAACCGCTTCCAAAGGATGCGCAGGGCTGCAGATGTCATTAAGCGTGGATGGAGGAAATGGAAA
Seq A exon
GCAAAAATGGCTGCTTTAGCAGCAGCAGAATTAGATGAGAACGATGAAAAGACACCTTTCTCAGCGATGTCAGCCAAATCACCATGCTCTTTGGAAACAGCTTGGCCTCTAAGTGCAATCATTCAGTTCTGGCCTCTTGGCCTCGTCCTGTCTGCTGCACCTGTTACCATAGTGGGACTCCGGAGAGAGCTGTCCCTGCTGGCATGCTTGAAAGTACTTCAGGGGATTGGCTGCTACAAGATGGAAAGCAGCTTCTTAGGCTGTGGCATCACTTCTGTTAGAGCTCTCCCACAG
Seq C2 exon
GGCTCTGTCAGGTTTCACTGCAAGAAGTCTCCCCTGCATTACGCAAATGTCAGTCCCCACACAGCTGCCTATTCTACCACCGGATTCAACCAGATTTTATTGGACAGAAAAGAACTGCTTCCAACATAACTTTTGGCCATCTGTATGTATGGAACTTTTTCCTTCAGGGAAGGACTGTCTGCAGGCTGCTGCTTTTCAAGTTATTCAATGTCCCTATCTGCTGCTACCTCAGTTTCCTATAATCACGCAGTGTACGCATATTATAATTCAAATTTAGAATGCAGGGGAGGCATTCCTCCTCTCAGACACACACACATACTAAAAGAAATAATCAGTACTATGAGAACACTCAATTAAAATAGATCAAATGCTTTAAAGAGTATATACTTGAACAGAACACTTCTAGCAGTACGTGGTCAAAACAAGAGGCTGCTAATGAGATAGCAAAAAAGGCAAACACTTCTGATGAATGCTGGGTTCTTGTTGGGAGGTACAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005374_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGCCAAGAACCGCTTCCA
R:
AGGTAGCAGCAGATAGGGACA
Band lengths:
302-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]