DreEX0006118 @ danRer10
Exon Skipping
Gene
ENSDARG00000073761 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr5:3619704-3625491:-
Coord C1 exon
chr5:3625406-3625491
Coord A exon
chr5:3620427-3620756
Coord C2 exon
chr5:3619704-3620034
Length
330 bp
Sequences
Splice sites
3' ss Seq
CGTTTTACTGCGCTCCTCAGGCG
3' ss Score
6.47
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTGTGAGATCCTGGAGGGTCAGAAGAGAGATTAAGAAGTGGCATAAAGCTGTATCAGTCATCCAAACCAAGTGGAGGCGCTGGAGA
Seq A exon
GCGTGGATGGATGCGCTAGCGGAGGCAGAGCTGGACGATGCAGAGGATTTAGTAGAAGAAGAAGCCGAAGCATCATTGATGCCGAATCTGCTGAAAGAGCGAGGCTCGGTCCAGCTGTGCAGCGTCCCGGAGCCGGTGCCGGTCAGAGGATGGCCTGTCGGTCTGGCCATGGCCTCCGCACCCTCTATCACTGTGTCTCTGACCGCCTCGGGCTTCCAGCGGATCATGTCCATCATGACCTGCATCAACATCCCGTTCAGACACGGCCAGTATAAAGTGAAAACCAACCAGTTTGACCAGGGGGTGGCGTCTATCCGAGCTCAGCCACGG
Seq C2 exon
GGCTCCATTAAGATGCATCTTCAGAGATCTCCACTGCTGTACGCGGACATGCATCCAGCGCACAAGACTGAAGTGGTGACCGGATTCAACCAGATCCTGCTGGAGAGAGACTGACTCGAGCTTTAATGCAAGCAATGCACCTTTGAAAAGCACTACACTACACATTATATAGCTGCCTTATTTATAGTGCAATTCTGTATTAGTTCTGTTGCGTTTACTCGCTCAGGTTTCAGCTTAAAGTGCCTTTTATTTCCGCTGCGTTCAGTCGGAATATACTGTAGAGCGTTTTATTATTATTACTTTAAAATACTGAGCTTCCATTTTATACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073761-'17-18,'17-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGGGTCAGAAGAGAGA
R:
ATATTCCGACTGAACGCAGCG
Band lengths:
351-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]