RnoEX0057231 @ rn6
Exon Skipping
Gene
ENSRNOG00000002852 | Myo19
Description
myosin XIX [Source:RGD Symbol;Acc:1559961]
Coordinates
chr10:72225087-72227462:+
Coord C1 exon
chr10:72225087-72225172
Coord A exon
chr10:72225967-72226266
Coord C2 exon
chr10:72227133-72227462
Length
300 bp
Sequences
Splice sites
3' ss Seq
AGGGATGTTTTCTCTTTAAGATC
3' ss Score
7.15
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTTTTCGGTCCTGGTTAACTCGGAAACACATCAGAAGGTTACACATAGCTGCCACAGTCATCAAGCACGCATGGCATAAGTGGAGA
Seq A exon
ATCAGAATGGCCTGTCTTGCCTCTAAAGAACTGGATGGTATGGAGGAAAAACTCATGCCTCAGGCTCCCGGTACCCTGCGTTCCTCGCTGTCCCCAGCACACACTAGGTTCCTGGGAGCAATAATCCACCTCTGGCCCCTGGGACTGGTGCTAGCCAACTCAGCTGATGGCATGCGTGGCTTTCAGAGGAAACTGGTAGCCCATGCCTGCCTTCGGCTTCCCGCAAGCGGCCCCAGCAACAAAGTCCAGACACCACAACAAGATCAGGCTGGTATCACATCCATCAGAGCACTGCCCCAG
Seq C2 exon
GGCTCAATAAAGTTCCACTGCAGGAAGTCTCCACTTCAGTATGCTGACATCTGCCCTGACCCTTCAGCCTCTAATGTTACTGGCTTTAATCAGATTCTGCTGCTAGAAAGACACAGGCCAGTCCAAGTGTGACTCTTCTACCCCCACCTGCCTGAGTGATCTTTACTGCTTTGTTTCCACAAGCCCTTTTCCTGCCAGCTGCCTTGCCAAAGACATCTGATCCCACACACAAGTGCCAAGCTATTCCCACAGCAACTCCAACTGACTCCAACTGCACGTGCAAGCAGATTCCAGCCTAAGCCAGGGCTTCATGGCCAAAGTGCCACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002852_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.260 C2=0.000
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(52.4=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGCCACAGTCATCAAGC
R:
CTGGCTTAGGCTGGAATCTGC
Band lengths:
345-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]