MmuEX6090819 @ mm9
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:109919738-109924534:-
Coord C1 exon
chr11:109924336-109924534
Coord A exon
chr11:109921194-109921360
Coord C2 exon
chr11:109919738-109919871
Length
167 bp
Sequences
Splice sites
3' ss Seq
CAATTATTTTTTCTGTTTAGGAT
3' ss Score
9.7
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATATTGGTATGACAGAAGATGTACAAGCTGGAGGGGCAAGGAGCCCAGAGAGGTTTGCTGAAGTAGAACAACTTGTCTCTTTACTTAATGGGAGGTGTAAGATGAAGGGGGGCATGGCTCTATGGTGGCAGCAACTCTGTGCAGTGACCAGGCTTCGCTTCTTGAAGTTAAAGCATGAAAGGAAATCCATCGTTATTCT
Seq A exon
GATTCTGGTTTTGGGGATTGGACTTCTGCATATTTTGTCAGCAAATATTTACAGGATGGTCCGTCAAAGTGACTACTGTTGGGAGCTTGCCCCTCATATGTACTTCCTCACACCAGGCCAGCAACCACAGCCGCCCCTCACGAACTTACTGATCGTCAACAAAACAG
Seq C2 exon
GAGCAAAAATCGATGACTTTATACATTCACTGGAACAACAGAACATAGCTTTGGAAGTTGATGCCTTTGGGACTAGAAATGGCACCGAGGACAGTCAGTATAATGGAGCTATCATCCTATCAGGTGACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'23-25,'23-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
A:
PF126982=ABC2_membrane_3=FE(15.8=100)
C2:
PF126982=ABC2_membrane_3=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGAGAGGTTTGCTGAAG
R:
TCGGTGCCATTTCTAGTCCCA
Band lengths:
245-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: