GgaEX1004156 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8193539-8195213:-
Coord C1 exon
chr18:8195021-8195213
Coord A exon
chr18:8194219-8194385
Coord C2 exon
chr18:8193539-8193666
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCACCTCTCTCTCCATGCAGTTT
3' ss Score
11
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGAGCGTGTCCCTGGGGAGTGGGCAGAAGGAGGAGCGCGGAGCCCAGAGGAGATGGAGCAGGGCTCCCTGCTGCTCTCAGACACTGGGAGGATGACACTCAGCAGCTGGGCACTCTGGAGGCAGCAGGTCTCTGCCATGGCATGGGTGCACTTCCTAAAGCTCAAGACCTCAGTGAAGAACCTCCTCTCCAT
Seq A exon
TTTGCTGCTCTATGTGGTTTTCCTGCTCCCCCTGATTTTGCAACTGGTACTGATGACTGTCTGGCAGAGCATGGGTGCCTGGGAGCTGTGCTCGTCGCGGTACTTCCTGCCCCTGCGGACCAGGGCTCATGATGACACCACCAACCTGCTGGTGCTCAACAGCACCG
Seq C2 exon
GCTCAGGCATTGAGGACTTCATCCACGCTCTTGAGAGCCAAGATCTCGCAGTGGAAATTACAAGCAAGGAAAATATCACAGAGGAGCTGAAATACAATGGGGCCATTAAAGTATCTCGTGAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'20-22,'20-21,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(15.4=96.5)
C2:
PF126982=ABC2_membrane_3=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGAGATGGAGCAGGG
R:
TGGCCCCATTGTATTTCAGCT
Band lengths:
254-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]