RnoEX6050282 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98261668-98264514:-
Coord C1 exon
chr10:98264316-98264514
Coord A exon
chr10:98263551-98263717
Coord C2 exon
chr10:98261668-98261801
Length
167 bp
Sequences
Splice sites
3' ss Seq
AACAGCTTTATTCTTTGCAGGCT
3' ss Score
7.19
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AGGTTGACATAGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAGAGACTCATGGAGATGGAGCAGACTCTCTCTACACTTACGGAGACGAAGAAGAAGACAGGCAGCTTGGCTCTCTGGAGACAGCAAACCTGTGCAATCGCAAAGGCTCGCTTGTTGAAGTTAAAGCATGAAAGGAAAACACTTCTCTCTGT
Seq A exon
GCTCTTGGTTCTGGGAGTTGCCCTTTGCCCTCTTCTTTTCGAAAGTATCAAGATGAAAATACTTCAGAGCGCTTACACTTGGGATCTTTCCCCACACTCGTACTTCCTTGCCCCTGGACAACAGCCCCACGGCATGCTCACTCAGTTACTGATCATCAATAAGACAG
Seq C2 exon
AGGCAAGCATTGATGACTTTATCCAGTCTGTGGAGCGCCAGAACATAGCTTTGGAAGTCGATGCTTCCGGAGCCAGAGATGGCACGGATGACCCATCCTTCAACGGAGCCCTTACAGTGTCTGGCGGTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGATCTGGGGACACA
R:
CCGGAAGCATCGACTTCCAAA
Band lengths:
243-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]