MmuEX0003041 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:109996649-109999643:-
Coord C1 exon
chr11:109999448-109999643
Coord A exon
chr11:109997352-109997518
Coord C2 exon
chr11:109996649-109996782
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTCCTCCACTTAGGTT
3' ss Score
9.72
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
ATGTTGGAATTTGTGGGCGCTTACAAAGCGATGGGGCAAGAGACATGGAAAGCCTCGTTGAGCTGGAGCAAGTGTTGTCTTTAGATTCGTCAGGAAGCTCAGTGAGTGGCATGGCGCTGTGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTTCGCTTCTTCAAGCTCAAGAATGAACGGAAAAGTCTGATGACTGT
Seq A exon
GTTATTGCTTTTTGGCATTAGCTTTGTCCCCCAACTTTTGGAACATCTCGTCTACAAGGTATACCACAAAAGTTATTCATGGGGGCTATCTCCAAGTATGTATTTCCTTTCACCAGGACAGCCACCACAGGATCCTCTGACCCACTTACTGGTCATCAATAGAACAG
Seq C2 exon
GTTCAAGCATCGATAACTTTGTACACGCACTAAGACAGCAGGGCATAGCATTAGACCTGGATGCCCTGGGGACCAGAAATGGCACAGAAGAGGCGCTGTACAATGGTGCTATCACGGTGCTGGGTGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'20-19,'20-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(0.7=3.5)
C2:
PF126982=ABC2_membrane_3=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAAGCCTCGTTGAGCTG
R:
CGCCTCTTCTGTGCCATTTCT
Band lengths:
247-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: