RnoEX6050309 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98444071-98447011:-
Coord C1 exon
chr10:98446816-98447011
Coord A exon
chr10:98444778-98444944
Coord C2 exon
chr10:98444071-98444204
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTTCCTCCATTTAGGTT
3' ss Score
11.17
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACGCTGGAGTTTGTGGTCGCTTGCTAAGCGATGGGGCAAAAGATGTGGAAAGCCTTGTTGAGCTGGAGCGAGTGTTGCCTCTCGATTCATCAGGGAGCTCAGTGAGCGGCATGGCGCTGTGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTCCGCTTCCTCAAGCTCAAGAACGAACGAAGAAGTCTGATGACCAT
Seq A exon
GTTATTGCTTTTTGGCATTAGCTTTGTGCCCCAACTTTTGGAACATCTAGTCTACAAGGTATACCACAAAAGTTACTCGTGGGGGCTGTCTCCAAGTATGTATTTCCTTTCACCAGGACAGTTACCACAGGATCCTCTGACCCACTTACTGGTCATCAATAAAACAG
Seq C2 exon
GTTCAAGCATTGATAACTTTATACATTCACTAAGACAGCAGGGCATAGCATTAGACGTGGATGCCCTGGGGACCAGAAATGGCAAAGAAGAGGCTCTGTACAATGGTGCTGTCACAGTGCTGGGTGACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'20-23,'20-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(3.6=19.3)
C2:
PF126982=ABC2_membrane_3=FE(14.2=100)
Main Skipping Isoform:
ENSRNOT00000087502fB324
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGGGCAAAAGATGTGGA
R:
CTTTGCCATTTCTGGTCCCCA
Band lengths:
255-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]