MmuEX6099115 @ mm9
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18128178-18129506:+
Coord C1 exon
chr2:18128178-18128266
Coord A exon
chr2:18128407-18128771
Coord C2 exon
chr2:18129410-18129506
Length
365 bp
Sequences
Splice sites
3' ss Seq
TTTCATTCTTATTACACTAGGAC
3' ss Score
7.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCTCCTCCTGATTCCCTGAACAGCAGTAAGAGCCCACATATAGGAAACAGCTTTTTACCTGACAATTCTCTTCCTGTATTAAATCAG
Seq A exon
GACTTGACCTCCAGTGGACAAAGCACCAGCAGTTCTTCTGCTCTTTCTACTCCCCCTCCTGCTGGCCAGAGTCCTGCTCAGCAGAGCTCTGGAGTCAGTGGGGTTCAGCAGGTGAATGGCGTGACAGTGGGGGCACTAGCTAGTGGGATGCAGACCGTCACATCCACCATCCCAGCTGTGTCCGCAGTGGGTGGAATAATTGGAGCTCTGCCAGGTAACCAACTGGCAATTAACGGCATTGTGGGAGCTTTAAATGGTGTGATTCAGACTCCAGTCACAATCTCCCAGAACCCTGCCCCTCTCACCCACACCAGTGTACCACCTAATGCAGCGCATCCAATGCCGGCCGCCGCACTGACCAACAG
Seq C2 exon
TGCCTCGGGACTAGGGCTGCTGTCGGACCAGCAGAGACAGATGTTTATCCAGCAGCAGCAGTTCCAGCAGCTGTTAAACTCCCAGCAGCTCACACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.525 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTCCTGATTCCCTGA
R:
GTGTGAGCTGCTGGGAGTTTA
Band lengths:
184-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: