GgaEX1036484 @ galGal3
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17836997-17843556:-
Coord C1 exon
chr2:17843456-17843556
Coord A exon
chr2:17842969-17843330
Coord C2 exon
chr2:17836997-17837099
Length
362 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTGTTTTTACACCAGGAG
3' ss Score
6.7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TAATTGCATTAGCACCTAGCACGGATTCCTTGAACAGCAGTAAAAGCCCTCATCTGGGAAACAGTTTTTTACCGGACAATTCTCTTCCCGTGTTAAATCAG
Seq A exon
GAGATAACCTCCAGCGGACAAAGCACCAGCAGTTCATCAGCTCTTTCCACTCCACCACCTGCTGGGCAGAGTCCAGCTCAGCAAGGCTCAGGAGTCACGGGAGTTCAACAGGTCAATGGTGTGACAGTGGGGGCACTAGCTAGTGGTATGCAGACTGTAACCTCCACCATTCCTGCAGTGCCTGGTGTGGGTGGAATAATTGGAGCGCTGCCAGCCAGCCAGCTGGCAATCAATGGAATTGTAGGGGCTTTAAATGGGGTAATTCAGACCCCAGCAACAATATCACAGAACCCTTCTCCTCTCACTCATGCAACCGTGCCACCCAATGCAACGCATCCTCTGCCAACTACATTAAACAACAG
Seq C2 exon
TGCCTCAGGACTGGGATTACTTCCTGACCAACAGAGACAACTTCTACTCCATCAACAGCACCAGCAATTCCAGCAATTACTAAGTACTCAGCAACTCACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-'28-43,'28-37,30-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.562 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTAGCACGGATTCCTTG
R:
CGATGTGAGTTGCTGAGTACT
Band lengths:
193-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]