MmuEX6099115 @ mm10
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18206551-18207879:+
Coord C1 exon
chr2:18206551-18206639
Coord A exon
chr2:18206780-18207144
Coord C2 exon
chr2:18207783-18207879
Length
365 bp
Sequences
Splice sites
3' ss Seq
TTTCATTCTTATTACACTAGGAC
3' ss Score
7.97
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCTCCTCCTGATTCCCTGAACAGCAGTAAGAGCCCACATATAGGAAACAGCTTTTTACCTGACAATTCTCTTCCTGTATTAAATCAG
Seq A exon
GACTTGACCTCCAGTGGACAAAGCACCAGCAGTTCTTCTGCTCTTTCTACTCCCCCTCCTGCTGGCCAGAGTCCTGCTCAGCAGAGCTCTGGAGTCAGTGGGGTTCAGCAGGTGAATGGCGTGACAGTGGGGGCACTAGCTAGTGGGATGCAGACCGTCACATCCACCATCCCAGCTGTGTCCGCAGTGGGTGGAATAATTGGAGCTCTGCCAGGTAACCAACTGGCAATTAACGGCATTGTGGGAGCTTTAAATGGTGTGATTCAGACTCCAGTCACAATCTCCCAGAACCCTGCCCCTCTCACCCACACCAGTGTACCACCTAATGCAGCGCATCCAATGCCGGCCGCCGCACTGACCAACAG
Seq C2 exon
TGCCTCGGGACTAGGGCTGCTGTCGGACCAGCAGAGACAGATGTTTATCCAGCAGCAGCAGTTCCAGCAGCTGTTAAACTCCCAGCAGCTCACACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-'74-97,'74-94,77-97
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.525 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTCCTGATTCCCTGA
R:
GTGTGAGCTGCTGGGAGTTTA
Band lengths:
184-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types