GgaEX1036484 @ galGal4
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17806376-17812923:-
Coord C1 exon
chr2:17812835-17812923
Coord A exon
chr2:17812348-17812709
Coord C2 exon
chr2:17806376-17806478
Length
362 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTGTTTTTACACCAGGAG
3' ss Score
6.7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CACCTAGCACGGATTCCTTGAACAGCAGTAAAAGCCCTCATCTGGGAAACAGTTTTTTACCGGACAATTCTCTTCCCGTGTTAAATCAG
Seq A exon
GAGATAACCTCCAGCGGACAAAGCACCAGCAGTTCATCAGCTCTTTCCACTCCACCACCTGCTGGGCAGAGTCCAGCTCAGCAAGGCTCAGGAGTCACGGGAGTTCAACAGGTCAATGGTGTGACAGTGGGGGCACTAGCTAGTGGTATGCAGACTGTAACCTCCACCATTCCTGCAGTGCCTGGTGTGGGTGGAATAATTGGAGCGCTGCCAGCCAGCCAGCTGGCAATCAATGGAATTGTAGGGGCTTTAAATGGGGTAATTCAGACCCCAGCAACAATATCACAGAACCCTTCTCCTCTCACTCATGCAACCGTGCCACCCAATGCAACGCATCCTCTGCCAACTACATTAAACAACAG
Seq C2 exon
TGCCTCAGGACTGGGATTACTTCCTGACCAACAGAGACAACTTCTACTCCATCAACAGCACCAGCAATTCCAGCAATTACTAAGTACTCAGCAACTCACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-'44-59,'44-52,47-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.587 C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTAGCACGGATTCCTTGA
R:
CGATGTGAGTTGCTGAGTACT
Band lengths:
192-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]