BtaEX6064034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23227446-23229132:+
Coord C1 exon
chr13:23227446-23227534
Coord A exon
chr13:23227673-23228034
Coord C2 exon
chr13:23229036-23229132
Length
362 bp
Sequences
Splice sites
3' ss Seq
CCTATTCTTCCTTATGTTAGGAC
3' ss Score
7.13
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCTACTACTGATTCCTTGAACAGCAGTAAGAGCCCTCATCTAGGAAACAGCTTTTTACCTGATAATTCTCTTCCTGTATTAAATCAG
Seq A exon
GACTTAACCTCCAGCGGACAAAGCACCAGCAGCTCATCGGCTCTTTCTACTCCACCTCCTGCCGGGCAGAGTCCAGCTCAGCAGGGCTCAGGCGTTAGCGGAGTTCAGCAGGTCAATGGTGTGACAGTGGGGGCACTGGCTAGTGGAATGCCGACTGTAACATCCACCATTCCTGCCGTGCCTGGAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAACTGGCAATTAATGGCATTGTAGGAGCTTTAAATGGGGTTATTCAGACCCCTGTCACAATATCCCAGAACCCTACCCCCCTCACCCACACAACTGTACCACCTAATGCAACACATCCAATGCCAGCTACACTGACTAACAG
Seq C2 exon
TGCCTCAGGACTAGGATTACTTTCTGACCAGCAAAGACAAATATTTCTTCATCAACAGCAATTCCAGCAGTTGTTAAATTCGCAACAGCTCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-'59-55,'59-54,62-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.967 A=0.603 C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTACTGATTCCTTGAACAGCA
R:
TGGTGTGAGCTGTTGCGAATT
Band lengths:
184-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]