RnoEX6054310 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84972618-84973947:+
Coord C1 exon
chr17:84972618-84972706
Coord A exon
chr17:84972845-84973209
Coord C2 exon
chr17:84973851-84973947
Length
365 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCTCTTTCCCGTAGGAC
3' ss Score
12.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTCCTACTACTGACTCTCTGAACAGCAGTAAGAGCCCGCATATAGGAAACAGCTTTGTACCCGACAATTCTCTTCCTGTATTAAATCAG
Seq A exon
GACCTGACTTCCAGTGGGCAAAGCACCAGCAGCTCTTCTGCTCTTTCCACTCCCCCGCCTGCTGGGCAGAGTCCAGCCCAGCAGGGCTCTGGAGTTAGTGGGGTTCAGCAGGTGAACGGCGTGACAGTGGGGCCACTAGCTAGTGGAATGCAGACTGTCACATCCACCATTCCTGCTGTGTCTGCAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAGCTGGCAATCAATGGCATTGTAGGAGCGTTAAATGGTGTTATTCAGACGCCGGTCACAATATCCCAGAACCCTGCCCCGCTCACCCACACCAGTGTGCCACCTAATGCAGCACATCCCATGCCAGCCGCCGCCCTGACTAACAG
Seq C2 exon
TGCCTCGGGCCTGGGGCTGCTGTCGGACCAGCAGCGACAGATGTTCCTCCAGCAGCAGCAGTTCCAGCAGCTCTTGAACTCCCAGCAGCTCACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-'43-48,'43-46,45-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.615 C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACTACTGACTCTCTGAACA
R:
GTGAGCTGCTGGGAGTTCAAG
Band lengths:
182-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]