MmuEX6099210 @ mm9
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22401857-22413940:+
Coord C1 exon
chr2:22401857-22401936
Coord A exon
chr2:22402378-22402455
Coord C2 exon
chr2:22413735-22413940
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTTGGTCTCCTTAGGGT
3' ss Score
10.78
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTAATCTGCCACTTTCTAAAACTAAAAACATAGTAAACTATCAGATGTGGAATTCAGAGAAATCCACAAACCTGACCAAG
Seq A exon
GGTGAAACTAGAGATGTCACATGCCATGCCTGTGAAACCACCAATGTGAAAACACAAACGGTCTCATCCTATTTTAGA
Seq C2 exon
TACTCCTTGATGGATTTATTATCTAAAATGGTAGTGGGCCAACCTCATTTTGTCCGTTGCATCAAACCAAATAATGAGCGACAGGCAAGAAAGTATGACAAGGAGAAAGTTCTGCTCCAGCTGCGTTGCACAGGGATTTTGGAAACAGCAAGAATTCGAAGGCTTGGTTATTCACATCGGATACTCTTCGCTAACTTTATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-'26-25,'26-24,27-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=PU(61.8=98.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAATCCACAAACCTGACCA
R:
CAAAATCCCTGTGCAACGCAG
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: