DreEX6093873 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6153459-6156121:-
Coord C1 exon
chr24:6156050-6156121
Coord A exon
chr24:6155794-6155874
Coord C2 exon
chr24:6153459-6153664
Length
81 bp
Sequences
Splice sites
3' ss Seq
AATATGTTGTGTTTGCGCAGACG
3' ss Score
7.15
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
TCTTCCTCTCGGAAATTAACTCCACCCATTGACAAATCAATGCTTGCCTTGCCTGTTGACTCTGTACAAACG
Seq A exon
ACGGAGAGCACTGGAGACACCACACATCACCCCAGGGAGACCACCAACATGAAGACTCAAACTGTAGCGTCGTACTTCAGA
Seq C2 exon
TATTCTCTAATGGACCTGCTATCAAAGATGGTGGCAGGCCAGCCTCATTTTGTTCGATGCATAAAACCCAACAATGATCGTCAAGCTCACAAGTTTGACAGGGAAAAGGTTCTGATCCAACTACGCTACACTGGTATTCTAGAGACGGCCAAGATCCGCAGACAAGGCTACTCTCATCGCATTCTCTTCAACAACTTCATCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'31-28,'31-27,33-28=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.630 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTGCCTGTTGACTCTG
R:
TGGCCGTCTCTAGAATACCAGT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]