GgaEX1038111 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16204058-16207570:-
Coord C1 exon
chr2:16207491-16207570
Coord A exon
chr2:16206782-16206859
Coord C2 exon
chr2:16204058-16204263
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTCATCTATACAGAAT
3' ss Score
8.03
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTAACCTGGCACACAGTAAAAGCAAAACTACAATCAGTTACCAGATGTGGACCCCCCAGAAATCAATCAGTCGTACAAAG
Seq A exon
AATGAATCAGGAGATACTGGACATCATCCAAGAGAGACAACCAGTATGAAAACACAAACAGTCGCTTCTTATTTCAGA
Seq C2 exon
TACTCTCTCATGGATTTGTTATCCAAAATGGTGGTTGGCCAGCCTCATTTTGTCCGGTGCATCAAGCCAAACAACGACCGGCAGGCAAACAAGTTTGATAAAGAAAAGGTGCTGGTTCAGCTGCGTTACACAGGAATTCTGGAGACAGCAAGGATTCGAAGACAGGGTTATTCGCACCGCATACTCTTTGCGAACTTCATAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'25-28,'25-26,26-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.654 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCACACAGTAAAAGCA
R:
ATCAAACTTGTTTGCCTGCCG
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]