BtaEX0023560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26890882-26895473:+
Coord C1 exon
chr13:26890882-26890961
Coord A exon
chr13:26891414-26891491
Coord C2 exon
chr13:26895268-26895473
Length
78 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTTCTTGGTCTTAGGGT
3' ss Score
10.76
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTAATCTGCCACATTCTCAAACTAAAAACATAATAAACTATCAAATGAAGACTTCAGAAAAATCAATCAACCTGACAAAG
Seq A exon
GGTGAGACTGGAGAAGCCACTCGTCATGCCAGAGAGACGACCAACATGAAAACACAAACAGTTGCATCCTATTTTAGA
Seq C2 exon
TATTCTCTGATGGATTTGTTATCTAAAATGGTGGTCGGCCAACCTCACTTCATCCGCTGCATCAAACCAAACAATGAACGTCAGGCAAGAAAATATGACAAAGAAAAGGTTGTGCTCCAGCTTCGCTACACGGGCATTCTGGAAACAGCAAGAATCCGAAGGCTGGGATATTCACATCGGATACTTTTTGCCAACTTTATAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123-'21-28,'21-27,22-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.538 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAAATCAATCAACCTGACA
R:
TTTCCAGAATGCCCGTGTAGC
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development