RnoEX6054374 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89115353-89119281:+
Coord C1 exon
chr17:89115353-89115432
Coord A exon
chr17:89115869-89115946
Coord C2 exon
chr17:89119076-89119281
Length
78 bp
Sequences
Splice sites
3' ss Seq
GTCTCCTTTGGTCTCCTTAGAGT
3' ss Score
9.11
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTAATTTGCCACTGTCTAAAACTAAAAATATAGTAAACTATCAGATGCAAAATTCAGAAAAATCTACAAACCTGAACAAG
Seq A exon
AGTGAAACTAGAGACGTCACGCGCCATGCCTATGAAACCACCAATGTGAAAACGCAAACGGTCTCATCATACTTTAGA
Seq C2 exon
TACTCCCTGATGGATTTGTTATCTAAAATGGTGGTGGGCCAACCTCATTTTGTCCGTTGCATCAAGCCAAATAATGATCGACAGGCAAGGAAGTATGACAAAGAGAAAGTTCTGATACAGCTGCGCTGCACCGGGATTTTGGAAACAGCAAGAATTCGAAGGCTTGGTTACTCACATCGGATACTGTTTGCTAACTTTATAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478-'26-29,'26-28,27-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAAATCTACAAACCTGAACA
R:
TGTTTCCAAAATCCCGGTGCA
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]