GgaEX1038111 @ galGal3
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
NA
Coordinates
chr2:16233246-16236758:-
Coord C1 exon
chr2:16236679-16236758
Coord A exon
chr2:16235970-16236047
Coord C2 exon
chr2:16233246-16233451
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTCATCTATACAGAAT
3' ss Score
8.03
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTAACCTGGCACACAGTAAAAGCAAAACTACAATCAGTTACCAGATGTGGACCCCCCAGAAATCAATCAGTCGTACAAAG
Seq A exon
AATGAATCAGGAGATACTGGACATCATCCAAGAGAGACAACCAGTATGAAAACACAAACAGTCGCTTCTTATTTCAGA
Seq C2 exon
TACTCTCTCATGGATTTGTTATCCAAAATGGTGGTTGGCCAGCCTCATTTTGTCCGGTGCATCAAGCCAAACAACGACCGGCAGGCAAACAAGTTTGATAAAGAAAAGGTGCTGGTTCAGCTGCGTTACACAGGAATTCTGGAGACAGCAAGGATTCGAAGACAGGGTTATTCGCACCGCATACTCTTTGCGAACTTCATAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.615 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCACACAGTAAAAGCA
R:
ATCAAACTTGTTTGCCTGCCG
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]