MmuEX6099921 @ mm9
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27864628-27865797:+
Coord C1 exon
chr2:27864628-27864681
Coord A exon
chr2:27865544-27865597
Coord C2 exon
chr2:27865690-27865797
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGACACCTACAGGGT
3' ss Score
8.52
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GGAGAGATCGGAGAGCCAGGGCAGAAGGGAAGCAAGGGCGACAAAGGCGAGCAG
Seq A exon
GGTCCTCCTGGGCCTACCGGTCCTCAAGGCCCGATTGGACAGCCAGGCCCTTCG
Seq C2 exon
GGAGCAGATGGTGAACCTGGCCCTCGTGGACAGCAGGGCCTGTTTGGGCAGAAAGGAGATGAAGGTTCAAGAGGTTTCCCAGGACCCCCCGGGCCAGTGGGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(2.1=11.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAGAAGGGAAGCAAG
R:
CTGCAATCCCACTGGCCC
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: