BtaEX6047776 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106884924-106886429:-
Coord C1 exon
chr11:106886376-106886429
Coord A exon
chr11:106885128-106885181
Coord C2 exon
chr11:106884924-106885031
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTCTCTTCCCCACAGGGT
3' ss Score
13.56
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
GGAGAGATTGGGGAGCCAGGACAGAAAGGGAGCAAGGGAGACAAAGGCGAGCAG
Seq A exon
GGTCCACCAGGGCCTACAGGACCTCAAGGCCCCATCGGACAGCCAGGCCCCTCC
Seq C2 exon
GGAGCCGATGGCGAGCCGGGACCTCGGGGCCAGCAGGGCCTCTTTGGGCAGAAAGGCGACGAGGGTCCGAGAGGCTTCCCCGGGCCCCCGGGCCCCGTGGGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'52-57,'52-56,53-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.4=5.6),PF0139113=Collagen=FE(23.0=100)
A:
PF0139113=Collagen=FE(23.0=100),PF0139113=Collagen=PU(16.4=61.1)
C2:
PF0139113=Collagen=PD(16.2=33.3),PF0139113=Collagen=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGATTGGGGAGCCAGGAC
R:
GGAAGCCTCTCGGACCCTC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]