GgaEX1016840 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8225883-8227038:+
Coord C1 exon
chr17:8225883-8225936
Coord A exon
chr17:8226682-8226735
Coord C2 exon
chr17:8226931-8227038
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCACTTCTGTTTCCTGGCAGGGT
3' ss Score
9.59
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGCGAGATCGGGGAGCCTGGCCAGAAGGGCAGCAAGGGTGACAAAGGGGAGCAG
Seq A exon
GGTCCACCAGGTCCTACAGGCCCACAAGGTCCGATCGGTCAGCCAGGTCCAGCT
Seq C2 exon
GGTGCTGATGGAGAGCCAGGTCCCAGAGGGCAGCAAGGCCTCTTTGGTCAGAAAGGTGATGAAGGACCTCGAGGTTTCCCCGGTCCCCCCGGCCCTGTGGGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'52-55,'52-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(1.3=5.6),PF0139113=Collagen=FE(19.8=100)
A:
PF0139113=Collagen=FE(19.8=100)
C2:
PF0139113=Collagen=PD(25.6=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATCGGGGAGCCTGG
R:
CCTCGAGGTCCTTCATCACCT
Band lengths:
126-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]