RnoEX6061499 @ rn6
Exon Skipping
Gene
ENSRNOG00000000463 | Col11a2
Description
collagen type XI alpha 2 chain [Source:RGD Symbol;Acc:2373]
Coordinates
chr20:3851600-3852034:+
Coord C1 exon
chr20:3851600-3851653
Coord A exon
chr20:3851773-3851826
Coord C2 exon
chr20:3851927-3852034
Length
54 bp
Sequences
Splice sites
3' ss Seq
GACTTCTCTTTTCTTCCTAGGGC
3' ss Score
10.64
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGTGAGGTGGGCGACCCTGGGCAGAAGGGAACCAAAGGAAACAAGGGTGAGCAT
Seq A exon
GGCCCTCCTGGCCCTCCTGGTCCCATCGGTCCTGTGGGGCAGCCTGGAGCTGCG
Seq C2 exon
GGAGCTGACGGCGAGCCCGGAGCCCGCGGACCCCAGGGACACTTTGGAGCCAAAGGTGACGAAGGAACAAGAGGGTTCAATGGGCCCCCTGGACCCATCGGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000463-'55-45,'55-44,56-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.8=100),PF0139113=Collagen=PU(2.7=11.1)
A:
PF0139113=Collagen=FE(21.0=100),PF0139113=Collagen=PU(12.9=44.4)
C2:
PF0139113=Collagen=PD(13.6=30.6),PF0139113=Collagen=FE(56.5=100),PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGGAAACAAGGGTGAGC
R:
CTGTAGGCCGATGGGTCCAG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]