BtaEX6096834 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7298148-7298611:-
Coord C1 exon
chr23:7298558-7298611
Coord A exon
chr23:7298402-7298455
Coord C2 exon
chr23:7298148-7298255
Length
54 bp
Sequences
Splice sites
3' ss Seq
GACTCTTCTTTCTCCCCCAGGGC
3' ss Score
11.94
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGCGAGGTGGGAGACCCTGGCCAGAAGGGCGCCAAAGGCAACAAGGGGGAGCAC
Seq A exon
GGCCCCCCTGGGCCCCCCGGACCCATCGGGCCTGTGGGGCAGCCTGGTGCTGCG
Seq C2 exon
GGGGCAGATGGGGAGCCTGGAGCTCGGGGTCCCCAGGGACACTTCGGAGCCAAAGGTGACGAAGGAACAAGAGGATTCAATGGGCCCCCGGGACCCATTGGTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.4=100)
A:
PF0139113=Collagen=FE(22.4=100),PF0139113=Collagen=PU(12.9=44.4)
C2:
PF0139113=Collagen=PD(9.2=19.4),PF0139113=Collagen=FE(56.5=100),PF0139113=Collagen=PU(5.2=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCCTGGCCAGAAGG
R:
GGGGCCCATTGAATCCTCTTG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]